Struct debruijn::dna_string::PackedDnaStringSet

pub struct PackedDnaStringSet {
    pub sequence: DnaString,
    pub start: Vec<usize>,
    pub length: Vec<u32>,
}

Container for many distinct sequences, concatenated into a single DnaString. Each sequence is accessible by index as a DnaStringSlice.

Fields

sequence: DnaString

start: Vec<usize>

length: Vec<u32>

Methods

impl<'a> PackedDnaStringSet

pub fn new() -> Self

Create an empty PackedDnaStringSet

pub fn get(&'a self, i: usize) -> DnaStringSlice<'a>

Get a DnaStringSlice containing ith sequence in the set

pub fn slice(&'a self, i: usize, start: usize, end: usize) -> DnaStringSlice<'a>

Get a DnaStringSlice containing ith sequence in the set

pub fn len(&self) -> usize

Number of sequences in the set

pub fn add<'b, R: Borrow<u8>, S: IntoIterator<Item = R>>(&mut self, sequence: S)

Trait Implementations

impl Clone for PackedDnaStringSet

fn clone(&self) -> PackedDnaStringSet

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for PackedDnaStringSet

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Serialize for PackedDnaStringSet

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de> Deserialize<'de> for PackedDnaStringSet

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.