Using enclone on Windows computers

• There is no installation script. Here are the approximate steps that are needed to install, equivalent to the medium option:

  mkdir bin cd bin Invoke-WebRequest https://github.com/10XGenomics/enclone/releases/latest/download/enclone_windows.exe -OutFile enclone.exe Add the full path of bin to your path. cd .. mkdir enclone cd enclone Download data by clicking here and waiting: https://github.com/10XGenomics/enclone-data/archive/refs/heads/master.zip. cd ../Downloads Expand-Archive -Path enclone-data-master.zip mv enclone-data-master/enclone-data-master/big_inputs/version15 ~/enclone/datasets

  After these steps, you should be able to run enclone commands.
• If you run an enclone command (other than enclone VIS, see below), add the argument PLAIN to your command. Without that, incomprehensible, untranslated escape sequences for coloring and bolding will appear in your terminal. Moreover, commands do not page their output, so the entire output of an enclone command will scroll past on your screen for each command typed. You may want to redirect output to a file.
• The command enclone VIS should work verbatim.
• Use of enclone under Windows has been minimally tested, so there may be problems. Please let us know!