Shown below is the output of the command:

enclone BCR=123089 CDR3=CARRYFGVVADAFDIW

[1] GROUP = 1 CLONOTYPES = 13 CELLS

[1.1] CLONOTYPE = 13 CELLS
┌───────────┬────────────────────────────────────────┬──────────────────────────────┐
│           │  CHAIN 1                               │  CHAIN 2                     │
│           │  740.1.2|IGHV4-30-4 ◆ 53|IGHJ3         │  253|IGKV1D-39 ◆ 217|IGKJ5   │
│           ├────────────────────────────────────────┼──────────────────────────────┤
│           │       1 1111111111111111               │  1 111111111111              │
│           │  256890 1111122222222223               │  0 011111111112              │
│           │  010148 5678901234567890               │  6 901234567890              │
│           │         ══════CDR3══════               │    ════CDR3════              │
│reference  │  LDPPSA ◦◦◦◦◦◦◦◦◦◦◦◦◦◦◦W               │  T CQQ◦◦◦◦◦◦◦◦◦              │
│donor ref  │  VGHPSA ◦◦◦◦◦◦◦◦◦◦◦◦◦◦◦W               │  T CQQ◦◦◦◦◦◦◦◦◦              │
├───────────┼────────────────────────────────────────┼──────────────────────────────┤
│#   n      │  ...x.. ..............x.     u  const  │  x ......x.....      u  const│
│1  10      │  VGHPSA CARRYFGVVADAFDIW  3953  IGHM   │  T CQQSYSTPPITF  10648  IGKC │
│2   2      │  VGHSSA CARRYFGVVADAFDIW  2626  IGHM   │  A CQQSYSPPPITF   9766  IGKC │
│3   1      │  VGHPSA CARRYFGVVADAFDIW     5  IGHM   │                              │
└───────────┴────────────────────────────────────────┴──────────────────────────────┘

This shows an invocation of enclone that takes one dataset as input and exhibits
all clonotypes for which some chain has the given CDR3 sequence.

What you see here is a compressed view of the entire information encoded in the
full length transcripts of the 13 cells comprising this clonotype: every base!
There is a lot to explain about the compression, so please read carefully.

• Clonotypes are grouped.  Here we see just one group having one clonotype in it.
• This clonotype has three exact subclonotypes in it, the first of which has 10 cells.
• This clonotype has two chains.  The reference segments for them are shown at the top.
• The notation 740.1.2 says that this V reference sequence is an alternate allele
  derived from the universal reference sequence (contig in the reference file)
  numbered 181, that is from donor 1 ("740.1") and is alternate allele 2 for that donor.
• Sometimes chains are missing from exact subclonotypes.
• Amino acids are assigned different colors depending on which codon they represent.
• Numbered columns show the state of particular amino acids, e.g. the first column is for amino
  acid 20 in chain 1 (where 0 is the start codon).  The numbers read vertically, downward!
• Universal ref: state for the contig in the reference file.
• Donor ref: state for the inferred donor germline sequence.
• ◦s are "holes" in the recombined region where the reference doesn't make sense.
• The "dot and x" line has xs where there's a difference *within* the clonotype.
• Amino acids are shown if they differ from the universal reference or are in the CDR3.
• u = median UMI count for a chain in the exact subclonotype.
• const = const region name for a chain in the exact subclonotype.

The view you see here is configurable: see the documentation at enclone help lvars and enclone
help cvars.