[][src]Module debruijn::graph

Containers for path-compressed De Bruijn graphs

Structs

BaseGraph

A compressed DeBruijn graph carrying auxiliary data on each node of type D. This type does not carry the sorted index arrays the allow the graph to be walked efficiently. The DeBruijnGraph type wraps this type and add those vectors.

DebruijnGraph

A compressed DeBruijn graph carrying auxiliary data on each node of type D. The struct carries sorted index arrays the allow the graph to be walked efficiently.

Node

Unbranched sequence in the DeBruijn graph

NodeIntoIter

Iterator over nodes in a DeBruijnGraph

NodeIter

Iterator over nodes in a DeBruijnGraph

NodeKmer

Iterator over nodes in a DeBruijnGraph

NodeKmerIter